How to map query coordinates on to genome gff annotation files ?
0
0
Entering edit mode
5 months ago
isha.lily20 ▴ 10

Hello Researchers

I have a project where i got stuck on :-

mapping query coordinates on to gff annotation files,

means i have to find all the total counts of gene, mRNA, exon, CDS, 3'-utr, 5'-utr, promoter, intergenic, intron, Transposable elements ?

I tried homer annotatePeaks.pl where i got only intergenic, exons, TTS & promoter-TSS(combined) ?

used this command line : annotatePeaks.pl <peak file | tss> <genome version> [additional options...]

where i dont know how to seperate promoter &TSS , or is there need to seperate both is also confusing .

please help me with ur knowledge

Thank you

mapping annotation gff • 302 views
ADD COMMENT
1
Entering edit mode

What did you try?

ADD REPLY

Login before adding your answer.

Traffic: 854 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6