Using reverse-complement or just complement of SILVA database to filter rRNA from metatranscriptomics
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5 months ago
Mort • 0

I want to use SILVA database to filter rRNA from metatranscriptomics.

The nucleobases in the SILVA fasta file are A, U, C and G. Therefore, before indexing the SILVA fasta file, should I get the reverse-complement or just complement of the SILVA fasta file?

Thanks in advance!

Mort

filtering just reverse-complement complement metatranscriptomics rRNA • 207 views
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