WGCNA, module preservation over permutations, how to?
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2.4 years ago
RNAseqer ▴ 260

Supposing had run 100 permutations of my expression data in WGCNA using sampledBlockwiseModules() and I wanted to see if a module I had observed in a previous run of that same data was preserved (specifically if I am aiming to get the preservation statistics) how would i go about doing that? Is there a simple function in WGCNA that allows me to do that, as there are so many handy/elegant functions in the package?

module WGCNA preservation • 614 views
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