Str_contraction in Mutect2 output
0
0
Entering edit mode
2.3 years ago
Raman2 ▴ 30

What exactly are str_contraction in the mutect2 output and what is their significance? The description says "Site filtered due to contraction of short tandem repeat region". Does this mean there was a mutation (snp or indel) in the STR region? What is the difference between a STR mutation call which has PASSed vs filtered due to str_contraction

Thanks!

str_contraction mutect2 STR • 483 views
ADD COMMENT

Login before adding your answer.

Traffic: 1663 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6