Deleted:What file type does "PLINK --block" accept as input?
0
0
Entering edit mode
2.2 years ago

Hi,

I have set of SNPs (distributed over all the chromosomes) and I am trying to do some haplotype block estimation to identify whether some of them are part of the same haplotype block, etc. It seems like "PLINK --blocks" does what I want, but it's unclear to me what file type to use as input. I have my SNPs as vcf.gz per chromosomes currently. Could someone please help me figure out what file type is appropriate?

Thank you

blocks Haploview Haplotype PLINK • 340 views
ADD COMMENT
This thread is not open. No new answers may be added
Traffic: 2249 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6