Snakemake workflow-PacBio
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4 months ago
priya.bmg ▴ 20

Hello

I am trying to implement the Pacbio snakemake workflow given in this link:https://github.com/PacificBiosciences/pb-human-wgs-workflow-snakemake/blob/main/Tutorial.md. I followed the instructions in the link to set the workflow. To align the sequence reads with reference genome, I ran the workflow, process_smrtcells.sh. I am not able to understand the snakemake error. Can someone familiar with snakemake help me to understand the error:

Building DAG of jobs... Using shell: /bin/bash Provided cluster nodes: 500 Job stats: job count min threads max threads ----- ------- ------------- ------------- all 1 1 1 total 1 1 1

Select jobs to execute...

[Mon Jan 17 09:57:55 2022] localrule all: jobid: 0 reason: Rules with neither input nor output files are always executed. resources: tmpdir=/scratch/thirun0000/slurm-job.28049826

[Mon Jan 17 09:57:55 2022] Finished job 0. 1 of 1 steps (100%) done Complete log: /scicore/home/cichon/GROUP/workflow/workflow_pacbio/.snakemake/log/2022-01-17T095754.372237.snakemake.log

Thanks

Priya

Snakemake PacBio • 167 views
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