Making a network of Microbiome abundance data and Metabolome data
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4 months ago

I have Microbiota abundance data (at many taxonomic levels) of a group of rats from an experiment and Metabolome data of the same rats. I want to make a map that correlates a family/genus of bacteria with the increase or decrease of a particular metabolite.

Examples of the tables of information that I have.

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I have an abundance table of family or genus level. I have an metabolome batch normalized data of the rats plasma and feces samples.

And also, this rats are divided in four groups.

I have been looking at many softwares, approaches, publications but I have not found one that suits my data and what I want to obtain.

If anyone has any tutorial or method that I can apply, I would appreciate it.

Network Metabolome Metabolites Microbiota Microbioma • 110 views

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