Scale total height phylogenetic tree
0
0
Entering edit mode
2.3 years ago
gubrins ▴ 290

Heys,

I calculated several trees for different parts of the genome for the same labels (tips) and I would like to plot it as here:as here

I don't mind the mitochondrial tree, what I would like to do is to plot in darker black the consensus tree and more blurred all the other trees that I calculated to get the consensus tree. I tried the densiTree function from phangorn in R, but the results are not visually nice. In the paper where I obtained this image they mentioned that they "Branch lengths were scaled for visualization so that the total height of each tree is the same." So, how I could scale the branch length? If not, do you know any other way to plot a similar thing to this one? I would be extremely grateful!

Thanks in advance!

phylogeny • 440 views
ADD COMMENT

Login before adding your answer.

Traffic: 1348 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6