Which clustering method is preferable to use in Heatmap?
0
0
Entering edit mode
4 months ago

Hi,

I am trying to draw a heatmap, using ComplexHeatmap package, of lipidomics data (values of blood concentration). I am not sure whether euclidean distance or pearson is more relevant for my plot. The method has to be data specific or there is some rule to choose a method based on? Prior to plot my data, I usually log10 transform the matrix and then scale the variables.

Thanks!

clustering R method ComplexHeatmap pearson euclidean • 199 views
ADD COMMENT

Login before adding your answer.

Traffic: 2281 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6