Which clustering method is preferable to use in Heatmap?
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2.3 years ago

Hi,

I am trying to draw a heatmap, using ComplexHeatmap package, of lipidomics data (values of blood concentration). I am not sure whether euclidean distance or pearson is more relevant for my plot. The method has to be data specific or there is some rule to choose a method based on? Prior to plot my data, I usually log10 transform the matrix and then scale the variables.

Thanks!

clustering R method ComplexHeatmap pearson euclidean • 476 views
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