FVA on Sybil
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Entering edit mode
2.1 years ago
isMM • 0

Does anyone know how to access the numeric results after using fluxVar() in Sybil ? I'm hopping for something similar to what you get with Cobratoolbox and fluxVariability() Im using the ec_core SBML for the example So far I have:

Fluxv<-fluxVar(ec_core)

values<-round(lp_obj(Fluxv),4)

This results in a bunch of numbers, but I'm having a hard time matching them to the reactions. How can I know to what does each value corresponds? Thanks (And sorry if this is a dumb question, I'm new in this)

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R Sybil metabolic fba fva • 413 views
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Entering edit mode
3 months ago
Thomas ▴ 10

The first half of this vector should be your minimal fluxes per reaction and the second half your maximal fluxes per reaction. Thus this vector should have the length of twice of the amount of your reactions.

See Value section here

https://rdrr.io/cran/sybil/man/fluxVar.html

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