Convert Bam to a single FASTA file

Question

[Raman2]

Hi!

How to covert a mapped BAM file to a single consensus FASTA file (similar to reference genome arranged by chromosomes)

Thanks!

Answer 1

[Santosh Anand]

What did you try on your own? Here are some of the suggestions by searching your keywords

Generating consensus sequence from bam file

https://chipster.csc.fi/manual/samtools-consensus.html

https://samtools.github.io/bcftools/howtos/consensus-sequence.html