How to find out why PRSice-2 excludes ambiguous SNPs
0
0
Entering edit mode
2.2 years ago
Phylicia ▴ 10

When I use PRSice to calculate PRS,it alerts it excludes 25 SNPs from the base data. But how could I know the reason why they are ambiguous? Could I explore more why they are ambiguous?

enter image description here

Question2: If I use PRSice to validate the PRS calculated by Plink, should I expect the results are exactly the same. Or should I just calculate the correlation between two scores. If they are highly correlated, I could regard PRSice validate the results of Plink. Thanks a lot!

PRS PRSice • 404 views
ADD COMMENT

Login before adding your answer.

Traffic: 2631 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6