any tool to plot the fragment profile for ctDNA samples?
0
0
Entering edit mode
5 months ago
J.F.Jiang ▴ 880

Hi all,

Fragment size of ctDNA offered us another dimension data, since cfDNA from tumors tended to smaller than normal ones.

As displayed in "Genome-wide cell-free DNA fragmentation in patients with cancer", fig.2 offered me a direct information (or comparison) between normal and tumors.

enter image description here

I am wondering is there any tool to generate such a figure from a single bam or batch of bams?

Thanks, Junfeng

fragment ctDNA • 163 views
ADD COMMENT

Login before adding your answer.

Traffic: 1625 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6