Entering edit mode
2.2 years ago
raalsuwaidi
▴
100
Hi all,
I was finally able with all the help to remove some SNPs from the vcf file and then run it through IMPUTE2.
This means I have the original vcf and the imputed vcf, how do run r2 analysis?
Is there a specific tool or scripts where I can give it the original file and the output file for comparison and indication for quality? I am really new in this area
