KeyError: "['GIMC5015'] not in index"

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2.1 years ago

Neel ▴ 20

Hi, I'm trying to run roary_plot.py and i got this error.. Please help me if anyone know anything about it.

python3.6 roary_plots.py accessory_binary_genes.fa.newick gene_presence_absence.csv Traceback (most recent call last): *

File "roary_plots.py", line 112, in <module> roary_sorted = roary_sorted[[x.name for x in t.get_terminals()]] File "/home/neel@m95/.local/lib/python3.6/site-packages/pandas/core/frame.py", line 2912, in __getitem__ indexer = self.loc._get_listlike_indexer(key, axis=1, raise_missing=True)[1] File "/home/neel@m95/.local/lib/python3.6/site-packages/pandas/core/indexing.py", line 1254, in _get_listlike_indexer self._validate_read_indexer(keyarr, indexer, axis, raise_missing=raise_missing) File "/home/neel@m95/.local/lib/python3.6/site-packages/pandas/core/indexing.py", line 1304, in _validate_read_indexer raise KeyError(f"{not_found} not in index") KeyError: "['GIMC5015'] not in index"

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Thank you

roary • 843 views

ADD COMMENT • link 2.1 years ago by Neel ▴ 20

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Your tip labels should be the same as in the gene presence-absence matrix.

ADD REPLY • link 2.1 years ago by zorbax ▴ 610

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Thank you so much

ADD REPLY • link 2.1 years ago by Neel ▴ 20

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