Simulating single cell and bulk RNA-seq data accounting for gene-gene correlations
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2.1 years ago

I am thinking of simulating some data to evaluate a single cell proportion estimation method. To do so, I am looking to simulating two datasets: 1) a single cell gene expression count matrix for some given cell type proportions 2) a simulated bulk RNA-seq matrix for the same genes. In this simulation, I want to be able to control gene-gene correlations so that, for example, all genes in both simulated datasets (single cell and bulk RNA-seq) have strong/weak correlation. I appreciate for ideas.

RNA-seq bulk simulation single-cell correlation • 335 views
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