Forum:CIRCexplorer2 - Getting Count Matrix
Entering edit mode
20 months ago
akamonto • 0

Hi Everyone, I am new to circRNA analysis, and I could use some help with clarification.

In summary, I have have paired end mouse samples that I have aligned using STAR. I have followed instructions on CIRCexploler2 tutorial and I have successfully parsed and annotated my STAR aligned samples. In my annotation folder, I have circularRNA_known.txt files output for every sample. I am now interested in getting count matrix to use for downstream analysis like DEG. I could really use some help figure how to get the counts from here. Thank you.

CIRCexplorer2 counts circRNA • 417 views

Login before adding your answer.

Traffic: 2023 users visited in the last hour
Help About
Access RSS

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6