where to find GRCh38 for 1000 Genomes
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2.5 years ago
raalsuwaidi ▴ 100

Hi,

in the previous GRCh37 build from 1000Genomes files were available in vcf format by chromosome through their portal. now for the GRCh38 i cannot seem to find the files.

any help on where i can find the files?

VCF GRCh38 1000Genomes • 1.1k views
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thank you so much. would it be possible if you can point me to where i can fine the map file? i will need it to be used in the imputation process.

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2.5 years ago

A plink2-formatted version of the current GRCh38 1000 Genomes phase 3 callset, preserving all annotations and phase information, is now available at https://www.cog-genomics.org/plink/2.0/resources . (Note that you can use --export vcf bgz to generate VCFs from this.)

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