roary and CD-hit
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2.1 years ago
zhichusun ▴ 10

I analyzed 100 genomes by roary software and got the pan_genome_reference.fa file which contains all the core genes and auxiliary genes, I then used cd-hit-est to remove redundant genes in this file, after that how can I get the gene_presence_absence from gene_presence_absence. Remove redundant genes for analysis in csv, any help is greatly appreciated

cd-hit. • 304 views
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