Best database for mouse scRNA-seq gene expression data ?

Question

[Gabriel]

My goal is to annotate cell types, I am using SingleR to compare the cells,

Is there a preferred database of summarized(per cell) single-cell gene expression to annotate immune celltypes?

Answer 1

[Soheil]

See the ImmGenData() from celldex R package here: https://bioconductor.org/packages/release/data/experiment/vignettes/celldex/inst/doc/userguide.html

There is an example in SingleR's vignette on using it with the celldex package.