How to extract region from GVCF file?
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7 months ago

I need to extract chr6 from gatk haplotypecaller -ERC GVCF generated g.vcf file. I have used bcftools view, generating a file that resembles gvcf. However, is it correct way to do that? I have tried gvcftools, but it does not appear to have an option to extract a region and generate gvcf file.

GVCF • 212 views
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