Is there anyway of selecting a list of reads in IGV? I would like to highlight a group of reads based on their ids or coordinates. I have duplicates on my RNA-Seq that I would like to visualize in IGV.
Alignment coloring. Coloring by “YC” tag can now be explicitly enabled and disabled through the “Color By” option of the alignment track pop-up menu. The menu item “Color By YC Tag” will appear, selected by default, if YC tags are used