Entering edit mode
                    3.5 years ago
        elb
        
    
        ▴
    
    260
    Hi guys, I would like to (box)plot the gene expression (unscaled data) of a list of genes using my desired order of clusters. Is there a fast way to do it?
Thank you in advance
I don't know about a box plot, but there are several other visualization options such as violin plots using
VlnPlot. Setfeaturesto the vector of genes you want to visualize,slottocountfor unscaled, untransformed gene counts, andidentsto specify which clusters (i think).https://satijalab.org/seurat/reference/vlnplot
https://satijalab.org/seurat/articles/visualization_vignette.html