User: elb

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elb110
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Torino
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7 hours ago
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6 years ago
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Posts by elb

<prev • 38 results • page 1 of 4 • next >
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Comment: C: FeatureCounts on HG38
... Successfully assigned reads is different ...
written 7 hours ago by elb110
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FeatureCounts on HG38
... Hi guys, I'm trying to move from HG19 to HG38. While running FeatureCounts using Refseq*.gtf I see some differences between HG19 and HG38. This I suppose is expected but I only would like to know if I'm doing wrong since I'm a newbie in the RNA-Seq HG38 analysis. Here some outputs of FeatureCounts ...
refseq star rna-seq hg19 written 16 hours ago by elb110 • updated 9 hours ago by h.mon16k
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Comment: C: Merge .bam files by groups of lanes
... It is fantastic! It works perfectly. Thank you very very much! ...
written 2 days ago by elb110
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Merge .bam files by groups of lanes
... Hi guys, I have a folder with around 300 `.bam` files. Each `.bam` file is a lane of a sample and hence 4 lanes make a sample. I would like to merge the .bam files of the four lanes in a single one by `_*S*_` where S is followed by a number that represent the number of the sample (e.g. `my_experime ...
bam samtools rna-seq written 2 days ago by elb110 • updated 2 days ago by WouterDeCoster30k
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Comment: C: RNA-Seq error in htseq-count
... So basically I'm doing some naive mistakes...I try to run properly. Thank you very much. ...
written 6 days ago by elb110
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RNA-Seq error in htseq-count
... Hi guys, I really do not know what is happening to my RNA seq data analysis pipeline and hence I'm looking for some help. Although I found some related posts and I tried to follow instructions to solve the problem I'm still here and I'm getting crazy. Briefly: the steps are the following: # STA ...
next-gen rna-seq sequencing written 7 days ago by elb110 • updated 7 days ago by swbarnes23.8k
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Comment: C: Network inference analysis with small sample size
... I have no idea...I used the mutual information in the past but with 300 samples... ...
written 3 months ago by elb110
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Network inference analysis with small sample size
... Guys, I have 5 samples (patients) and around 12.000 expressed genes. I would like to predict some interactions (networks) among that genes in terms of gene expression in each sample and across the samples. My question is: due to the small sample size, is there some statistic or some algorithm for t ...
sample size network gene expression written 3 months ago by elb110 • updated 3 months ago by genomax51k
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Comment: C: Statistical test for counts
... Thank you very much Devon! Your answer helped me a lot to clarify some key points. Thank you again. ...
written 3 months ago by elb110
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Statistical test for counts
... Hi guys, I would like to compare measures that are reported as percentages (with respect to a total) of cellular counts in 7 patients treated versus 7 patients untreated with a stimulating growth factor. I basically would like to compare the two distributions and assess, in a statistically signific ...
cell counts statistical test job written 3 months ago by elb110 • updated 3 months ago by Devon Ryan81k

Latest awards to elb

Supporter 7 days ago, voted at least 25 times.
Great Question 9 weeks ago, created a question with more than 5,000 views. For Check For Co-Expressed Genes In Microarray Experiments
Popular Question 4 months ago, created a question with more than 1,000 views. For regulatory regions discovery and alignment
Popular Question 4 months ago, created a question with more than 1,000 views. For Transcription Factors Annotation
Great Question 3.2 years ago, created a question with more than 5,000 views. For Check For Co-Expressed Genes In Microarray Experiments
Popular Question 3.2 years ago, created a question with more than 1,000 views. For Transcription Factors Annotation
Student 3.2 years ago, asked a question with at least 3 up-votes. For Looking For Network Visualization Tools
Popular Question 5.6 years ago, created a question with more than 1,000 views. For Check For Co-Expressed Genes In Microarray Experiments
Popular Question 5.6 years ago, created a question with more than 1,000 views. For Fold Change Detection In Affymetrix Microarray Data Without Replicates
Popular Question 5.6 years ago, created a question with more than 1,000 views. For Looking For Network Visualization Tools
Student 5.6 years ago, asked a question with at least 3 up-votes. For Looking For Network Visualization Tools

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