User: elb

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elb180
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Torino
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8 years ago
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Posts by elb

<prev • 102 results • page 1 of 11 • next >
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Comment: C: Survival time computation
... Thank you very much for your help! I also found a column with "year of death".So, based on: age at diagnosis, year of birth and year of death the follow-up can be calculated easily. ...
written 5 weeks ago by elb180
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Survival time computation
... Hi guys, since I'm a newbie in the field I'm not able to calculate the years of follow-up from the following data: > age days_to_birth days_to_death year_of_birth age_at_diagn days_to_last_follow_up > 71 -26085 1059 1936 26085 330 C ...
survival written 5 weeks ago by elb180
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Comment: C: Remove cells from Seurat based on a list
... Thank you very much! It works! ...
written 9 weeks ago by elb180
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Comment: A: Remove cells from Seurat based on a list
... So, basically subsetting on colnames(obj) removes the cells from all slots of the SeuratObject? Meaning @data,@sct @meta.data etc? Thank you very much ...
written 10 weeks ago by elb180
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Remove cells from Seurat based on a list
... Hi guys, is there a way to remove from Seurat3 object (all slots) a set of cells listed in a vector? I tried: > my_object_without_cells = subset(object = my_dataset, cells = cells_to_be_removed) but the cells are still there. I checked the n of cells and the n of genes and it is unchang ...
scrna written 10 weeks ago by elb180
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Annotate a list of RefSeqIDs
... Hi guys, given a list of RefSeq IDs is there a fast way to annotate them to HUGO gene symbols? BioMart returns Entrez GeneID that should be further annotated. Thank you in advance ...
genome written 3 months ago by elb180 • updated 3 months ago by genomax87k
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Comment: C: Annotation of acetylation ChIP-seq peaks to the nearest gene and reads cont
... To be honest is the first that my boss asked me...I think the second makes more sense.. I mean I have to apply edgeR pipeline to acChip-seq ...
written 3 months ago by elb180
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Comment: C: Annotation of acetylation ChIP-seq peaks to the nearest gene and reads cont
... First, thank you for help. I would like to perform a sort of differential expression analysis with the counts of the peaks and this is the reason why I have to have one single number of counts per gene. ...
written 3 months ago by elb180
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Annotation of acetylation ChIP-seq peaks to the nearest gene and reads cont
... Hi guys, suppose you are analysing acetylation Chip-Seq data. You have a list of peaks (with associated reads) in some genomic regions. Then you annotate the peaks to the nearest gene. At this point you have many peaks to the same gene name. How do you collapse this information to a single one in te ...
chip-seq written 3 months ago by elb180
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Comment: C: Get the count.matrix from Chip-Seq BAM files
... Yes, sure! thank you very much! ...
written 3 months ago by elb180

Latest awards to elb

Popular Question 7 weeks ago, created a question with more than 1,000 views. For regulatory regions discovery and alignment
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Popular Question 3 months ago, created a question with more than 1,000 views. For regulatory regions discovery and alignment
Popular Question 10 months ago, created a question with more than 1,000 views. For regulatory regions discovery and alignment
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Great Question 2.3 years ago, created a question with more than 5,000 views. For Check For Co-Expressed Genes In Microarray Experiments
Popular Question 2.4 years ago, created a question with more than 1,000 views. For regulatory regions discovery and alignment
Popular Question 2.4 years ago, created a question with more than 1,000 views. For Transcription Factors Annotation
Great Question 5.3 years ago, created a question with more than 5,000 views. For Check For Co-Expressed Genes In Microarray Experiments
Popular Question 5.3 years ago, created a question with more than 1,000 views. For Transcription Factors Annotation
Student 5.3 years ago, asked a question with at least 3 up-votes. For Looking For Network Visualization Tools
Popular Question 7.6 years ago, created a question with more than 1,000 views. For Check For Co-Expressed Genes In Microarray Experiments
Popular Question 7.6 years ago, created a question with more than 1,000 views. For Fold Change Detection In Affymetrix Microarray Data Without Replicates
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