User: elb
elb • 180
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Posts by elb
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C: Survival time computation
... Thank you very much for your help! I also found a column with "year of death".So, based on: age at diagnosis, year of birth and year of death the follow-up can be calculated easily. ...
written 5 weeks ago by
elb • 180
3
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... Hi guys,
since I'm a newbie in the field I'm not able to calculate the years of follow-up from the following data:
> age days_to_birth days_to_death year_of_birth age_at_diagn days_to_last_follow_up
> 71 -26085 1059 1936 26085 330
C ...
written 5 weeks ago by
elb • 180
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... Thank you very much! It works! ...
written 9 weeks ago by
elb • 180
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242
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... So, basically subsetting on colnames(obj) removes the cells from all slots of the SeuratObject? Meaning @data,@sct @meta.data etc?
Thank you very much ...
written 10 weeks ago by
elb • 180
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5 follow
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... Hi guys, is there a way to remove from Seurat3 object (all slots) a set of cells listed in a vector?
I tried:
> my_object_without_cells = subset(object = my_dataset, cells = cells_to_be_removed)
but the cells are still there. I checked the n of cells and the n of genes and it is unchang ...
written 10 weeks ago by
elb • 180
2
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106
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... Hi guys,
given a list of RefSeq IDs is there a fast way to annotate them to HUGO gene symbols?
BioMart returns Entrez GeneID that should be further annotated.
Thank you in advance ...
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... To be honest is the first that my boss asked me...I think the second makes more sense.. I mean I have to apply edgeR pipeline to acChip-seq ...
written 3 months ago by
elb • 180
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... First, thank you for help. I would like to perform a sort of differential expression analysis with the counts of the peaks and this is the reason why I have to have one single number of counts per gene. ...
written 3 months ago by
elb • 180
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138
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... Hi guys, suppose you are analysing acetylation Chip-Seq data. You have a list of peaks (with associated reads) in some genomic regions. Then you annotate the peaks to the nearest gene. At this point you have many peaks to the same gene name. How do you collapse this information to a single one in te ...
written 3 months ago by
elb • 180
0
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177
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... Yes, sure! thank you very much! ...
written 3 months ago by
elb • 180
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