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11
votes
6
replies
23k
views
6 follow
Remove cells from Seurat based on a list
scRNA-seq Seurat
updated 2.3 years ago by 45k • written 5.4 years ago by ▴ 260
1
vote
1
reply
2.9k
views
Seurat: (Box)plot unscaled gene expression of a list of genes by cluster
Seurat R cell single
updated 3.5 years ago by ★ 1.9k • written 3.5 years ago by ▴ 260
7
votes
4
replies
2.2k
views
How to distinguish INDELs from SNPs.
WGS WES
updated 3.9 years ago by 14k • written 3.9 years ago by ▴ 260
0
votes
0
replies
2.2k
views
Comment: Comment: How to distinguish INDELs from SNPs.
3.9 years ago by elb ▴ 260
1
vote
0
replies
918
views
Pairwise batch correction in Monocle3
single cell correction batch Monocle3 trajectories
4.1 years ago by elb ▴ 260
0
votes
0
replies
1.5k
views
Comment: Comment: Plot average expression instead of -Log10(FDR/p-val) in volcano plot
4.1 years ago by elb ▴ 260
4
votes
2
replies
1.5k
views
Plot average expression instead of -Log10(FDR/p-val) in volcano plot
plot volcano expression gene
4.1 years ago by elb ▴ 260
0
votes
0
replies
1.1k
views
Comment: Comment: Batch correction on scRNA-Seq data
4.5 years ago by elb ▴ 260
1
vote
2
replies
1.1k
views
Batch correction on scRNA-Seq data
scRNA-Seq
4.5 years ago by elb ▴ 260
6
votes
4
replies
2.4k
views
merge .fastq.gz files
RNA-seq
updated 4.6 years ago by 15k • written 4.6 years ago by ▴ 260
0
votes
0
replies
2.4k
views
Comment: Comment: merge .fastq.gz files
4.6 years ago by elb ▴ 260
0
votes
1
reply
1.4k
views
Comment: C: Combine two independent Seurat analysis into a single one
4.7 years ago by elb ▴ 260
2
votes
3
replies
1.4k
views
Combine two independent Seurat analysis into a single one
RNA-Seq seurat
updated 4.7 years ago by 45k • written 4.7 years ago by ▴ 260
0
votes
0
replies
2.3k
views
Comment: C: Forward and reverse single cell data analysis
4.7 years ago by elb ▴ 260
8
votes
10
replies
2.3k
views
Forward and reverse single cell data analysis
RNA-Seq
updated 4.7 years ago by 15k • written 4.7 years ago by ▴ 260
0
votes
1
reply
7.7k
views
Comment: C: Normalization and batch effects correction in RNA-Seq data
5.2 years ago by elb ▴ 260
8
votes
4
replies
7.7k
views
Normalization and batch effects correction in RNA-Seq data
RNA-Seq Combat
updated 5.2 years ago by 13k • written 5.2 years ago by ▴ 260
1
vote
0
replies
960
views
Comment: C: Survival time computation
5.3 years ago by elb ▴ 260
3
votes
2
replies
960
views
Survival time computation
survival
5.3 years ago by elb ▴ 260
0
votes
0
replies
23k
views
Comment: C: Remove cells from Seurat based on a list
5.4 years ago by elb ▴ 260
0
votes
0
replies
23k
views
Comment: A: Remove cells from Seurat based on a list
5.4 years ago by elb ▴ 260
2
votes
2
replies
930
views
Annotate a list of RefSeqIDs
genome
updated 5.5 years ago by 154k • written 5.5 years ago by ▴ 260
0
votes
0
replies
1.9k
views
Comment: C: Annotation of acetylation ChIP-seq peaks to the nearest gene and reads cont
5.5 years ago by elb ▴ 260
0
votes
1
reply
1.9k
views
Comment: C: Annotation of acetylation ChIP-seq peaks to the nearest gene and reads cont
5.5 years ago by elb ▴ 260
2
votes
4
replies
1.9k
views
Annotation of acetylation ChIP-seq peaks to the nearest gene and reads cont
ChIP-Seq
5.5 years ago by elb ▴ 260
0
votes
0
replies
1.9k
views
Comment: C: Get the count.matrix from Chip-Seq BAM files
5.5 years ago by elb ▴ 260
0
votes
1
reply
1.9k
views
Comment: C: Get the count.matrix from Chip-Seq BAM files
5.5 years ago by elb ▴ 260
2
votes
4
replies
1.9k
views
Get the count.matrix from Chip-Seq BAM files
ChIP-Seq
updated 5.5 years ago by 89k • written 5.5 years ago by ▴ 260
0
votes
0
replies
1.5k
views
Comment: C: Looping bedtools multicov on paired bam and bed files
5.5 years ago by elb ▴ 260
3
votes
2
replies
1.5k
views
Looping bedtools multicov on paired bam and bed files
ChIP-Seq bedtools
updated 5.5 years ago by 89k • written 5.5 years ago by ▴ 260
0
votes
0
replies
6.3k
views
Comment: C: Filtering the genes based on cpm in edgeR
5.6 years ago by elb ▴ 260
2
votes
5
replies
6.3k
views
Filtering the genes based on cpm in edgeR
RNA-Seq edgeR
5.6 years ago by elb ▴ 260
0
votes
1
reply
6.3k
views
Comment: C: Filtering the genes based on cpm in edgeR
5.6 years ago by elb ▴ 260
0
votes
1
reply
4.1k
views
Comment: C: Extract quality scores from aligned BAM files
5.6 years ago by elb ▴ 260
3
votes
4
replies
4.1k
views
Extract quality scores from aligned BAM files
ChIP-Seq
5.6 years ago by elb ▴ 260
0
votes
0
replies
2.7k
views
Comment: C: Average insert size and standard deviation among R1 and R2 scRNA-seq 10X
5.9 years ago by elb ▴ 260
0
votes
1
reply
2.7k
views
Comment: C: Average insert size and standard deviation among R1 and R2 scRNA-seq 10X
5.9 years ago by elb ▴ 260
3
votes
5
replies
2.7k
views
Average insert size and standard deviation among R1 and R2 scRNA-seq 10X
RNA-Seq scRNA-Seq sequencing
updated 5.9 years ago by 154k • written 5.9 years ago by ▴ 260
1
vote
0
replies
1.1k
views
chromHMM segmented genome annotation for genes
ChIP-Seq
5.9 years ago by elb ▴ 260
0
votes
0
replies
4.7k
views
Comment: C: Chip-seq best practice data analysis
6.0 years ago by elb ▴ 260
0
votes
1
reply
4.7k
views
Comment: C: Chip-seq best practice data analysis
6.0 years ago by elb ▴ 260
6
votes
7
replies
4.7k
views
Chip-seq best practice data analysis
ChIP-Seq
updated 6.0 years ago by 89k • written 6.0 years ago by ▴ 260
0
votes
0
replies
4.7k
views
Comment: C: Chip-seq best practice data analysis
6.0 years ago by elb ▴ 260
0
votes
0
replies
741
views
segmentation of Chip-exo DATA
ChIP-Seq
updated 6.0 years ago by 154k • written 6.0 years ago by ▴ 260
0
votes
0
replies
2.6k
views
Comment: C: Variability explained by a core of genes
6.2 years ago by elb ▴ 260
0
votes
1
reply
2.6k
views
Comment: C: Variability explained by a core of genes
6.2 years ago by elb ▴ 260
0
votes
1
reply
2.6k
views
Comment: C: Variability explained by a core of genes
6.2 years ago by elb ▴ 260
0
votes
0
replies
2.6k
views
Comment: C: Variability explained by a core of genes
6.2 years ago by elb ▴ 260
0
votes
1
reply
2.6k
views
Comment: C: Variability explained by a core of genes
6.2 years ago by elb ▴ 260
10
votes
12
replies
2.6k
views
Variability explained by a core of genes
RNA-Seq gene expression threshold variability
updated 6.2 years ago by 89k • written 6.2 years ago by ▴ 260
116 results • Page 1 of 3
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