Question: chromHMM segmented genome annotation for genes
gravatar for elb
11 months ago by
elb190 wrote:

Hi guys, I'm analyzing chromHMM output. I opened the file _dense.bed and *_expanded.bed into IGV and I look the genes mapping into the segments of the segmented file. I would like to ask you if it is possible from the .bed file that has only 4 columns (cur, start of the segment, end of the segment, state) to assign the name of the gene mapping into the segment.

Few lines of my bed file:

 V1     V2    V3   V4
chr10   0   47100  E6
chr10 47100 48900  E4
chr10 48900 49200  E7


I just would like to add a column with the gene name in the segment

Thank you in advance

chip-seq • 274 views
ADD COMMENTlink written 11 months ago by elb190
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1358 users visited in the last hour