Poly(A) analysis for nanopore reads

Question

[bioinfo_ga]

Hi everyone

I am interested in identifying the length of ployA tail for mrna-Seq data generated using nanopore platform.

Can you please let me know any tools or pipelines available for such analysis.

Thanks

Answer 1

[colindaven]

Nanopolish might help:

https://nanopolish.readthedocs.io/en/latest/quickstart_polya.html

and also

https://github.com/adnaniazi/tailfindr