Error in H5Fopen
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Entering edit mode
20 months ago

Hello-- I am trying to run a pipeline against a dataset (ArchR and Arrow Files), however when I use the following:

ArrowFiles <- c("fragments1.arrow", "fragments2.arrow", "fragments3.arrow")
proj_CAD1<- ArchRProject(
  ArrowFiles = ArrowFiles,
  outputDirectory = "/work/outputDirectory",
  copyArrows = TRUE
 )

I receive the following error:

Error in H5Fopen(file, flags=flags, fapl = fapl, native = native): HDF5. File accessibility. Unable to open file.

Any suggestions? (I was wondering if perhaps I can change permissions for the files but I tried to no avail.)

atac-seq scatac-seq • 543 views
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Hey, did you ever get it figured out? I ran into the same issue and can't tell what changed.

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