How to use python packages for mixed model while differential testing?
Entering edit mode
5 days ago
akilabioinfo ▴ 10

Hello All,

i have used scanpy for preprocessing and clustering the single cell dataset.

I would like to do differential testing using linear mixed model (including random and fixed effect parameters). We can use "MAST","lme4" for such analysis. (Definitely i can also use rpy2 for testing but still looking for other options in python itself)

Is there is any way we can do these models in python packages?

Please let me know your thoughts!!!!

Thanks Akila

DGE mixed model lme4 MAST • 81 views

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