How to use python packages for mixed model while differential testing?
0
0
Entering edit mode
5 days ago
akilabioinfo ▴ 10

Hello All,

i have used scanpy for preprocessing and clustering the single cell dataset.

I would like to do differential testing using linear mixed model (including random and fixed effect parameters). We can use "MAST","lme4" for such analysis. (Definitely i can also use rpy2 for testing but still looking for other options in python itself)

Is there is any way we can do these models in python packages?

Please let me know your thoughts!!!!

Thanks Akila

DGE mixed model lme4 MAST • 81 views
ADD COMMENT

Login before adding your answer.

Traffic: 1118 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6