How to convert CEL file to PLINK format
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7 weeks ago
Mira • 0

Hello,

I am a PhD student and I am working with SNP data for the first time.

All I have is .CEL file and from what I understand from the manuals for PLINK i need either .map and .ped or a VCF file. I'm struggling to find information on how to achieve that. A lot of sites I did find say I need a few different files besides .CEL.

I am working with SNP data from different apple varieties (plant breeding department), adn the idea is to analyse the data with PLINK.

Any help would be deeply appreciateed.

snp vcf plink apple cel • 107 views
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