Graphing gene fusions

Question

[Isaiah]

How should I go about graphing my fusions? Does anyone have any preferred packages that they use?

[Matthias Zepper]

That strongly depends on the graphical representation you are looking for and also your coding skills. Just google Circos plot or Sashimi plot in combination with your preferred language, and you will find libraries for R, Python, Javascript, Go etc.

[Isaiah]

Thank you!

Answer 1

[cmdcolin]

here are some tools I have collected and tagged as being used for "gene fusion" visualization https://cmdcolin.github.io/awesome-genome-visualization/?latest=true&tag=Gene%20fusion

choice of tool may depend on what format your data is in or what tools you used to call gene fusions in the first place (some tools may integrated with certain pipelines)