STAR-Fusion coding effect output file

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3.2 years ago

lay69490 • 0

hello. I am doing fusion analysis using STAR-Fusion.

To find out the sequence of the coding region, I added '--examine_coding_effect' as an option and ran it, but the Fusion_CDS information of the fusion gene I wanted to see was . will be displayed.

What does this mean??

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STAR-Fusion RNA-seq • 1.1k views

ADD COMMENT • link updated 3.2 years ago by Ram 45k • written 3.2 years ago by lay69490 • 0

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It means there is no data to report on those attributes for that particular fusion.

ADD REPLY • link 3.2 years ago by Ram 45k

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So, can I think of that fusion as noise?

ADD REPLY • link 3.2 years ago by lay69490 • 0

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I can't say that for sure. Is a fusion for which there is no annotated coding effect not a fusion? Is it lack of knowledge, a false positive or something else entirely?

ADD REPLY • link 3.2 years ago by Ram 45k

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