Is there a tool to standartise ANY kind of human variant list file? (like vcf, plink, 23andMe etc)
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4 months ago

I wan't to perform simple polygenic analysis. However, input data can be extremely diverse, ranging from complex VCFs to file with one column (or row....) containing rsIDs. Is there possibly an easy way to standartise them all?

23andme • 240 views
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4 months ago
4galaxy77 2.5k

plink/plink2 can import and export quite a wide range of different file types. But I doubt there's any tool that can convert between all file types.

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