Hello all, I would like to ask you a question about plotting data, retrieved from whole genome sequencing. Specifically, i have a data set contain positions for each chromosome and the allelic balance for each position (original was a vcf file). Since the dataset is really huge and chromosome positions are thousands, i tried on R but a messy plot was made.
I have seen that http://swav.popgenetics.net/ can be helpful although i have not used linux environments before. To give you an idea what i want i attach an image from an article. This plot was made by using sliding window analysis. Have you an idea whether i can plot it in R? Many thanks in advance!