How to analyse .cdf or .mzML raw mass spectrometry files to get relative abundances of compounds in metabolome?
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8 weeks ago
dpc ▴ 240

Hi there!!! I have around 100 files for 100 different samples which correspond to their metabolome data. The raw data files are in .cdf format. I want to analyze them to get the metabolites and their relative abundances. Can anyone tell me how to do that? I tried to use phenomenal pipeline. But i cannot sign in to the website probably because of some network or website issues. However, please recommend some other tools or workflows for achieving my objective.

Many thanks, Deep

mass spectrometry data metabolome analysis • 230 views

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