What are some Prokayotic assembly tools that use a reference fasta

Question

[m.radz]

I have short read sequences of several isolates that I want to assemble into contigs. I know what these isolates are so I can use a reference genome to improve the assembly process.

Trouble is I don't know what assembler to use, I typically work with metagenomes so use tools like spades and megahit, although to my understanding they don't use a reference file.

[andres.firrincieli]

I know what these isolates are so I can use a reference genome to improve the assembly process

What is the alignment fraction and ANI of the draft assemblies compared to the reference genomes?