doing PCA analysis from .geno file

Question

[UGUR]

Hello Guys,

I'm working on the population structures of a species, I've did genotyping analyses of the different populations is collected from the different geographic locations. I'm done genotyping analysis of all populations through angsd tool then, I've .geno and .mafs file to do PCA after I've did PCA analyse through a python script of PCAngsd but I need also another PCA pipeline to do this process again for double check, and to get used to different tools.

Thank you.