Colocalization analysis in Asian GWAS
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20 months ago
Helix ▴ 20

I am planning to add colocalization method as a post-GWAS analysis in my study which is solely based on east Asian populations. I have noticed that “coloc”, “enloc” and “eCaviar” are being commonly used for colocalization analysis but all of which are being conducted in European GWAS or European dominant meta-analyses. Some stated that GTEx eQTL data, which is a part of requirements in these tools, was mainly generated from European populations so that it would be difficult to get the accurate results in Asian populations because of LD differences. So, if anybody who had similar experiences or who did colocalization methods in Asian GWAS is in this forum, please let me know how to deal with this.

Colocalization Coloc eCaviar ENLOC GWAS • 455 views
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