Entering edit mode
20 months ago
challagandla.anil
▴
10
Dear all, Kindly help me with mirdeep2 as I am running the following command to identify all the novel miRNAs coming from a small RNA-Seq, the program is running forever without finishing. any suggestion to process it quicker or correct it.
miRDeep2.pl collapse_reads.fa genome.fa mapped_genome.arf miRBase_mature.fa other_mature.fa miRBase_stemloop.fa -g -1 -p -t rno -z 05_08_22
system: Cpu: I9 i9-10850K Ram: 64Gb it is using a single thread (any options for multi-thread mirdeep.pl ?) I have total 12 samples running (around 12gb input)
