Low number of nCount_RNA in single-cell RNAseq clusters?
0
0
Entering edit mode
8 weeks ago
shuaizh117 ▴ 10

Hello, after standard Seurat workflow, I checked the metrics of each cluster in the object. Please see the attached picture. How may I explain, in some of clusters, such as cluster 9 which has low nCount_RNA and nFeature_RNA but with an acceptable percent of mitochondria genes? I would think cluster 9 is a low quality of cell population and may be removed from the clusters? Any suggestions? enter image description here

quality cluster seurat nCount_RNA • 132 views
ADD COMMENT

Login before adding your answer.

Traffic: 1124 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6