TCGA data clustering
0
0
Entering edit mode
10 weeks ago
aUser ▴ 20

I downloaded RNAseq data from TCGA for LUAD and LUSC and now I wanted to cluster them. For that, I extracted normalized counts (from DESeq2 object) from each project sample independently, and concatenated (cbind) them. I feel that there should be an additional normalization step I need to perform to counter different project variations, but I am unable to figure it out. Anyone can guide me in this direction? I have been searching but I think my keywords are really bad. Thank you.

M3C ConsensusClusterPlus • 138 views
ADD COMMENT

Login before adding your answer.

Traffic: 2619 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6