Hello there, I received a file tab-delimited 16266 x 235 of gene ids with their samples. The data values correspond with the beta values of methylation data. I give a shot with the ChAMP R package, but I do have not the phenotype file or anything else. The idea is to classify the samples according to the data values and see how clustering the data, but I am not quite sure if I should normalize the data or whatever
Can someone help me to analyze that? I do not have any idea how I can manage it.
Sorry for the silly question, but I would be really happy if someone can help me.