How to do go enrichment under a parent GO term and its child GO term
0
0
Entering edit mode
9 weeks ago
Scabbards • 0

Hi, everyone I want to get the enrichment of specific GO term and its child GO terms.

Based on my first enrichment analysis through clusterProfiler, I find "GO:0044242" has remarkable enrichment. In this case, I want to know its child terms's enrichment condition.

However, through enrichGO() I can and can only get the enrichment of a large amount of GO terms at a parent level.

enter image description here

enter image description here

What I can do if I want to get the child terms(GO:0044237, GO:0009987...) of GO:0044242 and do GO enrichment analysis based on them?

enter image description here

enrichment clusterProfiler GO R • 144 views
ADD COMMENT

Login before adding your answer.

Traffic: 1550 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6