Deleted:How to get the structure file for maturebayes?
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19 months ago
bioinfo223 ▴ 10

Hello, I need to predict the mature miRNA from the precursor miRNA. how can I get the input structure file for MatureBayes?

like this

>hsa-mir-124-2  MI0000444       hairpin:47:57   mature:24:22    mature:61:20
External loop                           :   -60
Interior loop (  3 ,107 ) CG; (  3 ,107 ) CG:  -240
Interior loop (  4 ,106 ) AU; (  4 ,106 ) AU:  -210
Interior loop (  5 ,105 ) AU; (  5 ,105 ) AU:   -90
.(((((..(((((((((((((((..((((((((.(((..((((((((...........))))))))..))).))))))))..))))))))))))....)))..))))). (-51.20)

I used RNAfold but it gave me output like this

>dre
AUUUUACAAUUCAUGUCUGUCGUGAAUAGAUGUUACAUAGGUGUGCAAGUCUUAGCCUGUAAUUGUAUGUUUUGUUAAUUUCCAACGUGAGUCUAUUUUUUCUUUCAGAUUUUAAACGUUUUUUGAAAGAAAAUUAGCACACCAGACGACAAAGGU
GUGUGCUUCGACUGCUCAGUAUAUAAUGAAGAGACAAAGCGUUUGAGUUCGAGGGUAGGAAAAUGUUGUUUCCGGGCCAUGUGGUGGAAAAAAUGUCCAUUUUCCUCCCUUUAGUUGUGUUUAGUUUCUAUGUAGGGGAGAAAUGUACAAGAAAAA
CUCCAGUGUUUACCACAAACCAUUAGCAAAGUUUAUAAAGGAAGCACCGAUCCAUUAAGUGGCGAGACAGAUUGCUGAUAUCCUUGGAGGCAGACUGUUCCAGGUGCAACACUUGACACUGGGAAGGCACUGUCAAGGUGAGCAGGCUCUCUCAAU
ACCUGUCAAGAAGAUACCUGUCAUCUAUAUAUACCCUGUAGAUCCGGAUUUGUGUAAACAGACGCACAGUCACAAAUUCGUAUCUAGGGGAGUAUGUAGUUGAUGUAUAGGCUACAUUUCAACUUCAACGGGCAAAGAAGAUGACAUUAUAACUUU
CGGUUUGUUUAUUAAUUACUGUUUGGUAGUGGAAUAUUGUAGCAGGAACGAAAAUUCUUUUUUUCCCUAAGUACUACUUUUAUUUCAGUUAAAUUUUGGUGUAGAUUUGAAGUGAGUUUAUGGUAUCACACAUAUUUUGUGAGACCUUCAAAGAAU
UCGAAUUUAAAGAAAAAAAAAAGAAUUCGAAAUGAGCAAAUAUAUUUGUACAGUUUUGCACUGAUUAAUGAUUAUCUGAAUGCAGUGAUUUUUAAACAUUACUAUCAGUAAACAGCGAGAAAUAUUUGCUGCUGGCGUUAAUAGUGAAUUGAGCAC
AUAUAUUACUAUUCAGUGUGUGUAGAUUUGGCAUGCAGGAUAAACGCGCUGUUUGGAGUGGAAUGACUGCAGACUCCGUUUAAAU
........(((((((.....))))))).............((((((((((((..(((((.((((((((((....(((((((.((((((.(((.....((((((((((((............))))))))))))...(((((((..........)))
))))((((.(.((..(((........)))..)).).))))(((((..((((((((((........(((((((...(((((.(((((((.....(((.(((((..(((((((..((..............))..)))))))))))).))).......
.....((((((.((.........................))))))))...))))))).))))))))))))........))))))))))..))))).....((((((.....(((((((.(((((.(((.((((........))))))).)))))..
...)))))))....)))))).((((..((((((((((.(((((.((((((((((................)))))))))).))))).))).)))))))...)))).(((((((.((((((((.......(((.((((((((............(((
((.((((((((((.((((((....))))))..))))....))))))..)))))..)))))))).)))...........(((((.((((.......)))).))))).)))))))))))))))(((.(((((.......))))).))).........(
((((((((..............)))))))))...(((((((((.(((((...((((...(((((((((((.(((...((((......)))).))).)))))..)))))))))).)))))..)))))))))))).)))))....).)))))))..))
))))).....)))))).))....)))))).))))))....((((((.(..(((((.(((......))).))))).)))))))... (-265.90)
maturebayes rnafold • 356 views
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