Is it possible to run CibersortX with a very small number of samples?

Question

[Aspire]

I am trying to impute group expression profile in CibersortX for a condition with 3 samples. For that, I have reduced my signature matrix to two cell types only (t-cells + "other").

However, running CibersortX (in GEP mode) throws an error

Error: $ operator is invalid for atomic vectors
In addition: Warning message:
In mclapply(1:no_cores, res, mc.cores = no_cores, mc.set.seed = FALSE,  :
  all scheduled cores encountered errors in user code
Execution halted

Adding samples removes the error.

Has anyone encountered this and succeeded to bypass?

[f2ff7a46]

Hi - Did you solve this issue, I am having the same problem

[Sarah]

also running into this!