How to make a Dotplot like this in R for my clustered single cell data set
0
0
Entering edit mode
17 months ago
paria ▴ 90

Hello all, I did my single cell analysis in Seurat. I would like to make a dot plot like the below one with dendrogram. Anybody knows how I can make this plot for my dataset. I would like it to visualize the expression of gene markers which I specify. This one is made using scanpy but I do work in R Seurat. I appreciate any help! Paria

enter image description here

data single DotPlot cell • 2.1k views
ADD COMMENT
0
Entering edit mode
ADD REPLY
0
Entering edit mode

Thank you! I am not sure how to create the scRNA_dotplot_data.tsv.gz needed for start of analysis. I appreciate it if you have done this and share the code with me. Paria

ADD REPLY

Login before adding your answer.

Traffic: 2007 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6