User: paria.alipour

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Posts by paria.alipour

<prev • 7 results • page 1 of 1 • next >
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Answer: A: Unused argument in R
... The problem was solved. That is right I did not run gen.norm.data before this code. Thank you all ...
written 4 weeks ago by paria.alipour0
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Unused argument in R
... I am calling two function repeatedly (Nrep times) and save the results using the below code: repeat.gendat <- function(Nreps,N, quantilelist=c(0,1,5,50,95,99,100), distrib='norm',n.mean=5, n.stdev=3,e.lambda=0.1, qq=0.5,M=1) { ...
R written 5 weeks ago by paria.alipour0
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Integration of 10X genomics single-nuclei RNA seq datasets
... I have the single nuclei datasets (10X genomics) from 4 different regions of brain and spinal cord of two groups (patients and control). I am trying to compare different regions within patients (resistant and vulnerable region to pathology) and between patients and controls. Actually, I have differe ...
R rna-seq sequencing written 6 weeks ago by paria.alipour0 • updated 5 days ago by Biostar ♦♦ 20
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Comment: C: single-nuclei 10X genomics
... Thanks a lot for your response ...
written 6 weeks ago by paria.alipour0
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single-nuclei 10X genomics
... I have the single-nuclei 10X genomics datasets from different regions of the human brain and spinal cord. I've got some questions: First, I could not find any recent paper to have an idea what is the proportion of different cell types in these different regions (oculomotor nucleus, medulla, anterior ...
R rna-seq written 7 weeks ago by paria.alipour0 • updated 7 weeks ago by jared.andrews077.5k
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Comment: A: Best package to cluster a single cell dataset using marker gene lists retrieved
... Hi @jared.andrews07. To pick up on this question shall I provide the reference database for using SingleR? As I am trying to annotate cell type in my datasets which I don't have a reference for it. I appreciate any help. Paria ...
written 7 weeks ago by paria.alipour0
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Comment: C: Gene list of Neuronal Markers for TSNE plot
... Hello, I was trying to open the link. But access is forbidden. I was wondering how I can have access to this link? Thanks ...
written 5 months ago by paria.alipour0

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