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230
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Why DEG analysis of the same region in two different datasets results in different sets of DEGs?
single integration cell DEG design analysis
11 weeks ago by paria ▴ 70
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4
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467
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Why my single cell cluster is splitted?
clustering single-cell
updated 11 weeks ago by ★ 23k • written 12 weeks ago by ▴ 70
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467
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Comment: Comment: Why my single cell cluster is splitted?
12 weeks ago by paria ▴ 70
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2
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199
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If using singeR return more clusters than available ones should I do reclustering?
singleR
updated 12 weeks ago by ★ 14k • written 12 weeks ago by ▴ 70
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0
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442
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Comment: Comment: Should I necessarily use cluster evaluation tools for my single cell dataset?
3 months ago by paria ▴ 70
2
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2
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442
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Should I necessarily use cluster evaluation tools for my single cell dataset?
single-cell cluster-evaluation scclusteval
3 months ago by paria ▴ 70
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0
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625
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Comment: Comment: Single cell cluster evaluation does not output reasonable number of stable clust
3 months ago by paria ▴ 70
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1
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625
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Comment: Comment: Single cell cluster evaluation does not output reasonable number of stable clust
3 months ago by paria ▴ 70
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0
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272
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integration using rPCA with reference or without it?
integration Seurat rPCA Single-cell
3 months ago by paria ▴ 70
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0
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666
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Comment: Comment: How to convert Seurat object to sce object retaining the HVG
3 months ago by paria ▴ 70
2
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3
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666
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How to convert Seurat object to sce object retaining the HVG
HVG single-cell SingleCellExperiment seurat
3 months ago by paria ▴ 70
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1
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367
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singleR annotation shows overlapping clusters
single cluster cell annotation singleR Seurat
updated 3 months ago by ★ 14k • written 3 months ago by ▴ 70
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0
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865
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Comment: Comment: What should I do if the gene IDs in my reference dataset and test dataset are di
3 months ago by paria ▴ 70
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1
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865
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Comment: Comment: What should I do if the gene IDs in my reference dataset and test dataset are di
3 months ago by paria ▴ 70
3
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3
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865
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What should I do if the gene IDs in my reference dataset and test dataset are different
gene-ID RNA-seq R singleR
3 months ago by paria ▴ 70
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1
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603
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Comment: Comment: How do I know if I'm overcorrecting my single cell data
6 months ago by paria ▴ 70
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0
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612
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Comment: Comment: How to make a Dotplot like this in R for my clustered single cell data set
6 months ago by paria ▴ 70
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2
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612
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How to make a Dotplot like this in R for my clustered single cell data set
data single DotPlot cell
6 months ago by paria ▴ 70
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0
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603
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Comment: Comment: How do I know if I'm overcorrecting my single cell data
6 months ago by paria ▴ 70
1
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5
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603
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How do I know if I'm overcorrecting my single cell data
Rpca sn-RNA overcorrection seq seurat CCA
updated 6 months ago by ★ 14k • written 6 months ago by ▴ 70
2
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2
replies
1.6k
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How should I solve the error: comparison (3) is possible only for atomic and list types
single ScaleData cell rpca analysis
updated 7 months ago by 129k • written 7 months ago by ▴ 70
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0
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342
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Comment: Comment: Does chemistry have significant effects on my single nucleus dataset?
7 months ago by paria ▴ 70
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2
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342
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Does chemistry have significant effects on my single nucleus dataset?
single-nucleus chemistry dataset
7 months ago by paria ▴ 70
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4
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625
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Single cell cluster evaluation does not output reasonable number of stable clusters
RNA scclusteval single-cell integration harmony sequencing
3 months ago by paria ▴ 70
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1
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1.1k
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Comment: Comment: How do I know the SNPS which are removed when clumping are in a LD block or SNPs
updated 19 months ago by 85k • written 19 months ago by ▴ 70
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3
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1.1k
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How do I know the SNPS which are removed when clumping are in a LD block or SNPs not existed in 1000 Genome
Randomization data clumping Mendelian GWAS
updated 19 months ago by 85k • written 19 months ago by ▴ 70
1
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3
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614
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How to process batches to be able to correct for its effect
batch-correction sample-randomization
updated 21 months ago by 12k • written 21 months ago by ▴ 70
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1
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614
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Comment: Comment: How to process batches to be able to correct for its effect
21 months ago by paria ▴ 70
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0
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392
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Do I need to include the "ins:me:alu" line for my MR analysis
Randomization Mendelian data stat GWAS Summary
23 months ago by paria ▴ 70
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0
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4.8k
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Answer: Answer: Low Fraction Reads in Cells (Cellranger Count Pipeline)
2.0 years ago by paria ▴ 70
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0
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497
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How to update rsid given chromosome number, chr position, a1 and a2
SNP ID
2.0 years ago by paria ▴ 70
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0
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854
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Comment: Comment: Cell composition in each condition of single cell data
2.1 years ago by paria ▴ 70
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0
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854
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Comment: Comment: Cell composition in each condition of single cell data
2.2 years ago by paria ▴ 70
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3
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854
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Cell composition in each condition of single cell data
cell composition single-cell scProportionTest
2.1 years ago by paria ▴ 70
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1
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7.4k
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Comment: Comment: correct way of analyzing cell proportions in singlecell data
2.2 years ago by paria ▴ 70
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0
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3.6k
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Comment: C: regressing out covariate from Seurat integrated data
2.3 years ago by paria ▴ 70
6
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9
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3.6k
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regressing out covariate from Seurat integrated data
single-cell seurat
updated 16 months ago by ▴ 10 • written 2.3 years ago by ▴ 70
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0
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3.6k
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Comment: A: regressing out covariate from Seurat integrated data
2.3 years ago by paria ▴ 70
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0
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3.6k
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Comment: C: regressing out covariate from Seurat integrated data
2.3 years ago by paria ▴ 70
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0
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552
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Integration or not?
single-cell RNA sequencing seurat integration
2.3 years ago by paria ▴ 70
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0
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1.6k
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Comment: C: Unused argument in R
2.3 years ago by paria ▴ 70
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8
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1.6k
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Unused argument in R
R
2.3 years ago by paria ▴ 70
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0
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2.1k
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Comment: C: How to regress out variants using SCTransform function?
2.3 years ago by paria ▴ 70
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1
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2.1k
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Comment: C: How to regress out variants using SCTransform function?
2.3 years ago by paria ▴ 70
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1
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2.1k
views
Comment: C: How to regress out variants using SCTransform function?
updated 2.3 years ago by 12k • written 2.3 years ago by ▴ 70
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1
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2.1k
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Comment: C: How to regress out variants using SCTransform function?
updated 2.3 years ago by 12k • written 2.3 years ago by ▴ 70
2
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7
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2.1k
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How to regress out variants using SCTransform function?
Single-nuclei RNA sequencing SCTransform Seurat
2.3 years ago by paria ▴ 70
0
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0
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509
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single-nuclei 10X genomics sequencing metrics
RNA-Seq sequence
2.5 years ago by paria ▴ 70
0
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0
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715
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Integration of 10X genomics single-nuclei RNA seq datasets
RNA-Seq R sequencing
updated 2.6 years ago by 20 • written 2.7 years ago by ▴ 70
1
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1
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1.6k
views
Answer: A: Unused argument in R
2.7 years ago by paria ▴ 70
54 results • Page 1 of 2
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