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comments
0
votes
0
replies
230
views
Why DEG analysis of the same region in two different datasets results in different sets of DEGs?
single
integration
cell
DEG
design
analysis
11 weeks ago by
paria
▴ 70
1
vote
4
replies
467
views
Why my single cell cluster is splitted?
clustering
single-cell
updated 11 weeks ago by
Mensur Dlakic
★ 23k • written 12 weeks ago by
paria
▴ 70
0
votes
0
replies
467
views
Comment:
Comment: Why my single cell cluster is splitted?
12 weeks ago by
paria
▴ 70
0
votes
2
replies
199
views
If using singeR return more clusters than available ones should I do reclustering?
singleR
updated 12 weeks ago by
jared.andrews07
★ 14k • written 12 weeks ago by
paria
▴ 70
0
votes
0
replies
442
views
Comment:
Comment: Should I necessarily use cluster evaluation tools for my single cell dataset?
3 months ago by
paria
▴ 70
2
votes
2
replies
442
views
Should I necessarily use cluster evaluation tools for my single cell dataset?
single-cell
cluster-evaluation
scclusteval
3 months ago by
paria
▴ 70
0
votes
0
replies
625
views
Comment:
Comment: Single cell cluster evaluation does not output reasonable number of stable clust
3 months ago by
paria
▴ 70
0
votes
1
reply
625
views
Comment:
Comment: Single cell cluster evaluation does not output reasonable number of stable clust
3 months ago by
paria
▴ 70
0
votes
0
replies
272
views
integration using rPCA with reference or without it?
integration
Seurat
rPCA
Single-cell
3 months ago by
paria
▴ 70
0
votes
0
replies
666
views
Comment:
Comment: How to convert Seurat object to sce object retaining the HVG
3 months ago by
paria
▴ 70
2
votes
3
replies
666
views
How to convert Seurat object to sce object retaining the HVG
HVG
single-cell
SingleCellExperiment
seurat
3 months ago by
paria
▴ 70
0
votes
1
reply
367
views
singleR annotation shows overlapping clusters
single
cluster
cell
annotation
singleR
Seurat
updated 3 months ago by
jared.andrews07
★ 14k • written 3 months ago by
paria
▴ 70
0
votes
0
replies
865
views
Comment:
Comment: What should I do if the gene IDs in my reference dataset and test dataset are di
3 months ago by
paria
▴ 70
0
votes
1
reply
865
views
Comment:
Comment: What should I do if the gene IDs in my reference dataset and test dataset are di
3 months ago by
paria
▴ 70
3
votes
3
replies
865
views
What should I do if the gene IDs in my reference dataset and test dataset are different
gene-ID
RNA-seq
R
singleR
3 months ago by
paria
▴ 70
0
votes
1
reply
603
views
Comment:
Comment: How do I know if I'm overcorrecting my single cell data
6 months ago by
paria
▴ 70
0
votes
0
replies
612
views
Comment:
Comment: How to make a Dotplot like this in R for my clustered single cell data set
6 months ago by
paria
▴ 70
0
votes
2
replies
612
views
How to make a Dotplot like this in R for my clustered single cell data set
data
single
DotPlot
cell
6 months ago by
paria
▴ 70
0
votes
0
replies
603
views
Comment:
Comment: How do I know if I'm overcorrecting my single cell data
6 months ago by
paria
▴ 70
1
vote
5
replies
603
views
How do I know if I'm overcorrecting my single cell data
Rpca
sn-RNA
overcorrection
seq
seurat
CCA
updated 6 months ago by
jared.andrews07
★ 14k • written 6 months ago by
paria
▴ 70
2
votes
2
replies
1.6k
views
How should I solve the error: comparison (3) is possible only for atomic and list types
single
ScaleData
cell
rpca
analysis
updated 7 months ago by
GenoMax
129k • written 7 months ago by
paria
▴ 70
0
votes
0
replies
342
views
Comment:
Comment: Does chemistry have significant effects on my single nucleus dataset?
7 months ago by
paria
▴ 70
0
votes
2
replies
342
views
Does chemistry have significant effects on my single nucleus dataset?
single-nucleus
chemistry
dataset
7 months ago by
paria
▴ 70
1
vote
4
replies
625
views
Single cell cluster evaluation does not output reasonable number of stable clusters
RNA
scclusteval
single-cell
integration
harmony
sequencing
3 months ago by
paria
▴ 70
0
votes
1
reply
1.1k
views
Comment:
Comment: How do I know the SNPS which are removed when clumping are in a LD block or SNPs
updated 19 months ago by
Kevin Blighe
85k • written 19 months ago by
paria
▴ 70
0
votes
3
replies
1.1k
views
How do I know the SNPS which are removed when clumping are in a LD block or SNPs not existed in 1000 Genome
Randomization
data
clumping
Mendelian
GWAS
updated 19 months ago by
Kevin Blighe
85k • written 19 months ago by
paria
▴ 70
1
vote
3
replies
614
views
How to process batches to be able to correct for its effect
batch-correction
sample-randomization
updated 21 months ago by
rpolicastro
12k • written 21 months ago by
paria
▴ 70
0
votes
1
reply
614
views
Comment:
Comment: How to process batches to be able to correct for its effect
21 months ago by
paria
▴ 70
0
votes
0
replies
392
views
Do I need to include the "ins:me:alu" line for my MR analysis
Randomization
Mendelian
data
stat
GWAS
Summary
23 months ago by
paria
▴ 70
0
votes
0
replies
4.8k
views
Answer:
Answer: Low Fraction Reads in Cells (Cellranger Count Pipeline)
2.0 years ago by
paria
▴ 70
0
votes
0
replies
497
views
How to update rsid given chromosome number, chr position, a1 and a2
SNP
ID
2.0 years ago by
paria
▴ 70
0
votes
0
replies
854
views
Comment:
Comment: Cell composition in each condition of single cell data
2.1 years ago by
paria
▴ 70
0
votes
0
replies
854
views
Comment:
Comment: Cell composition in each condition of single cell data
2.2 years ago by
paria
▴ 70
0
votes
3
replies
854
views
Cell composition in each condition of single cell data
cell
composition
single-cell
scProportionTest
2.1 years ago by
paria
▴ 70
0
votes
1
reply
7.4k
views
Comment:
Comment: correct way of analyzing cell proportions in singlecell data
2.2 years ago by
paria
▴ 70
0
votes
0
replies
3.6k
views
Comment:
C: regressing out covariate from Seurat integrated data
2.3 years ago by
paria
▴ 70
6
votes
9
replies
3.6k
views
regressing out covariate from Seurat integrated data
single-cell
seurat
updated 16 months ago by
botloggy
▴ 10 • written 2.3 years ago by
paria
▴ 70
0
votes
0
replies
3.6k
views
Comment:
A: regressing out covariate from Seurat integrated data
2.3 years ago by
paria
▴ 70
0
votes
0
replies
3.6k
views
Comment:
C: regressing out covariate from Seurat integrated data
2.3 years ago by
paria
▴ 70
0
votes
0
replies
552
views
Integration or not?
single-cell RNA sequencing
seurat
integration
2.3 years ago by
paria
▴ 70
0
votes
0
replies
1.6k
views
Comment:
C: Unused argument in R
2.3 years ago by
paria
▴ 70
4
votes
8
replies
1.6k
views
Unused argument in R
R
2.3 years ago by
paria
▴ 70
0
votes
0
replies
2.1k
views
Comment:
C: How to regress out variants using SCTransform function?
2.3 years ago by
paria
▴ 70
0
votes
1
reply
2.1k
views
Comment:
C: How to regress out variants using SCTransform function?
2.3 years ago by
paria
▴ 70
0
votes
1
reply
2.1k
views
Comment:
C: How to regress out variants using SCTransform function?
updated 2.3 years ago by
rpolicastro
12k • written 2.3 years ago by
paria
▴ 70
0
votes
1
reply
2.1k
views
Comment:
C: How to regress out variants using SCTransform function?
updated 2.3 years ago by
rpolicastro
12k • written 2.3 years ago by
paria
▴ 70
2
votes
7
replies
2.1k
views
How to regress out variants using SCTransform function?
Single-nuclei RNA sequencing
SCTransform
Seurat
2.3 years ago by
paria
▴ 70
0
votes
0
replies
509
views
single-nuclei 10X genomics sequencing metrics
RNA-Seq
sequence
2.5 years ago by
paria
▴ 70
0
votes
0
replies
715
views
Integration of 10X genomics single-nuclei RNA seq datasets
RNA-Seq
R
sequencing
updated 2.6 years ago by
Biostar
20 • written 2.7 years ago by
paria
▴ 70
1
vote
1
reply
1.6k
views
Answer:
A: Unused argument in R
2.7 years ago by
paria
▴ 70
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