SeuratObject to CellChatObject
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9 weeks ago
Anst ▴ 30

Hello!

I am trying to convert seurat object to cellchat one using

cellchat <- createCellChat(object = seurat, meta = seurat@meta.data, group.by = "labels")

It runs with the error Error: No images present in this Seurat object. I check my seurat object, and it does not have anything in its image field. (but I computed PCA, UMAP and all the preprocessing images)

So, the question is how to insert something in this field, or is there another way of converting seurat to cellchat?

Thanks!

SeuratObject RNASeq Cellchat Seurat CellChatObject • 125 views
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