Does the bootstrap in kallisto affect the BAM files?
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14 months ago
bioinfo ▴ 140

Hello,

I was given the abundance files from kallisto for a project. However, I also needed the genomebam files which where given to me later. I noticed that for the bam files the kallisto command was run differently. The first files were run without -b but when the bam files were generated they were run with -b 100. Would the bootstrap option change anything on the BAM files? I just want to visualize them on IGV to check if my knock out has worked. I am not sure if I can use the BAM files I was provided with or if I should ask for them again.

Thank you

RNAseq kallisto BAM • 733 views
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14 months ago
dsull ★ 5.5k

No, bootstraps have no effect on BAM files.

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